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Bioedit Sequence Alignment Editor software
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Bioedit Sequence Alignment Editor

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Added: November 30, 2013 | Visits: 166

ngsview NGSView is a generally applicable, flexible and extensible next-generation sequence alignment editor. The software allows for visualization and manipulation of millions of sequences simultaneously on a desktop computer, through a graphical interface.



Platforms: *nix

License: Freeware Size: 77.7 MB Download (22): ngsview Download

Added: February 01, 2010 | Visits: 930

Algorithm::NeedlemanWunsch Algorithm::NeedlemanWunsch is a sequence alignment with configurable scoring. SYNOPSIS use Algorithm::NeedlemanWunsch; sub score_sub { if (!@_) { return -2; # gap penalty } return ($_[0] eq $_[1]) ? 1 : -1; } my $matcher = Algorithm::NeedlemanWunsch->new(&score_sub); my $score =...





Platforms: *nix

License: Freeware Size: 10.24 KB Download (86): Algorithm::NeedlemanWunsch Download

Released: September 10, 2012  |  Added: September 10, 2012 | Visits: 253

Jalview Jalview is used widely in a variety of web pages but is available as a general purpose alignment editor. for WindowsAll


Platforms: Windows

License: Freeware Download (47): Jalview Download

Released: November 04, 2012  |  Added: November 04, 2012 | Visits: 243

UGENE UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. for WindowsAll


Platforms: Windows

License: Freeware Download (51): UGENE Download

Added: August 21, 2013 | Visits: 229

FSA For Linux FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.


Platforms: *nix

License: Freeware Size: 9.61 MB Download (20): FSA For Linux Download

Released: July 11, 2005  |  Added: July 03, 2006 | Visits: 7.670

Sequence Diagram Editor Windows modeling tool that simplifies and speeds up the creation and maintenance of UML sequence diagrams, telecom/wireless call flow diagrams and process workflow diagrams. Sequence Diagram Editor performs automatic layout/formatting (across multiple pages if necessary) and supports additional...


Platforms: Windows

License: Shareware Cost: $99.00 USD Size: 6.82 MB Download (538): Sequence Diagram Editor Download

Added: November 08, 2013 | Visits: 213

Phylo-mLogo Phylo-mLogo is an interactive multiple-logo visualization tool for large-number sequence alignments which allows the user to visualize the global profile of whole multiple sequence alignment and to hierarchically visualize homologous logos of each clade simultaneously.


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 1.97 MB Download (16): Phylo-mLogo Download

Added: August 18, 2013 | Visits: 170

SinicView SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools. Background Deluged by the rate and complexity of completed genomic sequences, the need to align longer sequences becomes more urgent, and many more tools have thus been developed. In the...


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 3.92 MB Download (17): SinicView Download

Added: January 25, 2010 | Visits: 546

MacVector MacVector... Researchers who want a simple but comprehensive desktop sequence analysis application continually turn to MacVector, the leading sequence analysis package for the Macintosh. MacVector provides sequence editing, primer design, Internet database searches, protein analysis, sequence...


Platforms: Mac

License: Shareware Cost: $0.00 USD Download (101): MacVector Download

Added: June 23, 2013 | Visits: 203

MUMmerGPU MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.


Platforms: *nix

License: Freeware Size: 51.2 KB Download (16): MUMmerGPU Download

Added: January 26, 2010 | Visits: 655

NeoBio NeoBio project consists of Bioinformatics algorithms in Java. What algorithms? The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman & Wunsch (global alignment) and Smith & Waterman (local alignment)....


Platforms: *nix

License: Freeware Size: 102.4 KB Download (91): NeoBio Download

Released: September 09, 2012  |  Added: September 09, 2012 | Visits: 276

Geneious for Mac OS An automatically-updating library of genomic and genetic data; that provides a fully integrated, visually-advanced toolset for - Sequence alignment and phylogenetics - Sequence analysis, Contig assembly, - primers, restriction analysis - BLAST. Protein structure viewing, NCBI, UniProt, Pubmed...


Platforms: Mac

License: Freeware Size: 77 MB Download (28): Geneious for Mac OS Download

Released: August 07, 2012  |  Added: August 07, 2012 | Visits: 207

MacGDE for Mac OS A set of programs for multiple sequence alignment and analysis. The programs use an expandable user interface which allows the addition of external analysis functions without any rewriting of code. The system supports several data types, nucleic and amino acid sequences, text, and masking...


Platforms: Mac

License: Freeware Size: 42.8 MB Download (28): MacGDE for Mac OS Download

Released: October 14, 2012  |  Added: October 14, 2012 | Visits: 236

BACContigEditor BACContigEditor is a simple sequence alignment editing tool, written in Java. It is originally developed for finishing BAC shotgun sequencing projects, but the program could be easily extended to the whole genome project.


Platforms: Windows, Mac, Linux

License: Freeware Size: 867.54 KB Download (27): BACContigEditor Download

Released: June 27, 2012  |  Added: June 27, 2012 | Visits: 263

FSA FSA is a probabilistic multiple sequence alignment algorithm which uses a 'distance-based' approach to aligning homologous protein, RNA or DNA sequences.


Platforms: Mac, BSD, Linux

License: Freeware Size: 9.61 MB Download (29): FSA Download

Released: August 12, 2012  |  Added: August 12, 2012 | Visits: 217

JAligner JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.


Platforms: Windows, Mac, Linux

License: Freeware Size: 162.36 KB Download (28): JAligner Download

Added: November 11, 2013 | Visits: 205

MSA2SNP MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.


Platforms: Mac

License: Shareware Cost: $0.00 USD Size: 143.36 KB Download (30): MSA2SNP Download

Released: September 13, 2012  |  Added: September 13, 2012 | Visits: 259

NeedlemanWunsch Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/


Platforms: Mac, BSD, Linux

License: Freeware Size: 36.87 KB Download (27): NeedlemanWunsch Download

Released: June 08, 2012  |  Added: June 08, 2012 | Visits: 275

Sequences studio Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regular expressions it computes similarity with two initially unknown strings. Project page provides code generating applet.


Platforms: Windows, Mac, Linux

License: Freeware Size: 96.58 KB Download (27): Sequences studio Download

Released: October 16, 2012  |  Added: October 16, 2012 | Visits: 224

SmithWaterman An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/


Platforms: Mac, BSD, Linux

License: Freeware Size: 43.02 KB Download (29): SmithWaterman Download

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